To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("systemPipeRdata")

In most cases, you don't need to download the package archive at all.

systemPipeRdata

DOI: 10.18129/B9.bioc.systemPipeRdata    

systemPipeRdata: NGS workflow templates and sample data

Bioconductor version: Release (3.5)

systemPipeRdata is a helper package to generate with a single command NGS workflow templates that are intended to be used by its parent package systemPipeR. The latter is an environment for building end-to-end analysis pipelines with automated report generation for next generation sequence (NGS) applications such as RNA-Seq, RIBO-Seq, ChIP-Seq, VAR-Seq and many others. Detailed examples for using systemPipeRdata are given in systemPipeR's overview vignette.

Author: Thomas Girke

Maintainer: Thomas Girke <thomas.girke at ucr.edu>

Citation (from within R, enter citation("systemPipeRdata")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("systemPipeRdata")

Documentation

HTML R Script Overview Vignette
PDF   Reference Manual
Text   README
Text   NEWS

Details

biocViews Alignment, ChIPSeq, Coverage, DataImport, ExperimentData, GeneExpression, GeneSetEnrichment, Genetics, Infrastructure, MethylSeq, QualityControl, RNASeq, SNP, Sequencing
Version 1.5.0
License Artistic-2.0
Depends methods
Imports BiocGenerics
LinkingTo
Suggests RUnit, BiocStyle, knitr, rmarkdown, systemPipeR
SystemRequirements
Enhances
URL https://github.com/tgirke/systemPipeRdata
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package systemPipeRdata_1.5.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/systemPipeRdata
Package Short Url http://bioconductor.org/packages/systemPipeRdata/
Package Downloads Report Download Stats

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