To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("seqc")

In most cases, you don't need to download the package archive at all.

seqc

 

   

RNA-seq data generated from SEQC (MAQC-III) study

Bioconductor version: Release (3.5)

The SEQC/MAQC-III Consortium has produced benchmark RNA-seq data for the assessment of RNA sequencing technologies and data analysis methods (Nat Biotechnol, 2014). Billions of sequence reads have been generated from ten different sequencing sites. This package contains the summarized read count data for ~2000 sequencing libraries. It also includes all the exon-exon junctions discovered from the study. TaqMan RT-PCR data for ~1000 genes and ERCC spike-in sequence data are included in this package as well.

Author: Yang Liao and Wei Shi

Maintainer: Yang Liao <liao at wehi.edu.au> and Wei Shi <shi at wehi.edu.au>

Citation (from within R, enter citation("seqc")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("seqc")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("seqc")

 

PDF R Script SEQC Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews ExperimentData, RNASeqData, SequencingData, qPCRData
Version 1.10.0
License GPL-3
Depends R (>= 2.10)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://bioconductor.org/packages/release/data/experiment/html/seqc.html
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source seqc_1.10.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Subversion source (username/password: readonly)
Package Short Url http://bioconductor.org/packages/seqc/
Package Downloads Report Download Stats

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