To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("pcxnData")

In most cases, you don't need to download the package archive at all.

pcxnData

DOI: 10.18129/B9.bioc.pcxnData    

Correlation coefficients and p values between pre-defined pathway/gene sets

Bioconductor version: Release (3.6)

PCxN database contains correlation coefficients and p values between pre-defined gene sets within MSigDB H hallmark gene sets, MSigDB C2 CP (Canonical pathways), MSigDB C5 GO BP gene sets and Pathprint respectively.

Author: Sokratis Kariotis, Yered Pita-Juarez, Winston Hide, Wenbin Wei

Maintainer: Sokratis Kariotis <s.kariotis at sheffield.ac.uk>

Citation (from within R, enter citation("pcxnData")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("pcxnData")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pcxnData")

 

PDF R Script pcxnData
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews ExperimentData, ExpressionData, GEO, Homo_sapiens_Data, MicroarrayData, OneChannelData, PathwayInteractionDatabase
Version 1.0.0
License MIT + file LICENSE
Depends R (>= 3.4)
Imports
LinkingTo
Suggests pcxn
SystemRequirements
Enhances
URL
Depends On Me pcxn
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package pcxnData_1.0.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/pcxnData
Package Short Url http://bioconductor.org/packages/pcxnData/
Package Downloads Report Download Stats

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