pathprintGEOData

DOI: 10.18129/B9.bioc.pathprintGEOData    

Pathway fingerprint vectors representing a subsection of arrays from the GEO data repository

Bioconductor version: Release (3.7)

Pathway Fingerprint vectors that have been pre-calculated for ~390,000 publicly available arrays from the GEO corpus, spanning 6 species and 31 platforms. All data are accompanied by their associated metadata.

Author: Gabriel Altschuler, Sokratis Kariotis

Maintainer: Sokratis Kariotis <s.kariotis at sheffield.ac.uk>

Citation (from within R, enter citation("pathprintGEOData")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("pathprintGEOData")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pathprintGEOData")

 

PDF R Script pathprintGEOData
PDF   Reference Manual

Details

biocViews Caenorhabditis_elegans_Data, Danio_rerio_Data, Drosophila_melanogaster_Data, ExperimentData, ExpressionData, GEO, Genome, Homo_sapiens_Data, MicroarrayData, Mus_musculus_Data, OneChannelData, PathwayInteractionDatabase, Rattus_norvegicus_Data, SequencingData, TwoChannelData
Version 1.10.0
License GPL
Depends R (>= 3.4)
Imports
LinkingTo
Suggests pathprint, SummarizedExperiment
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me pathprint
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package pathprintGEOData_1.10.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/pathprintGEOData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pathprintGEOData
Package Short Url http://bioconductor.org/packages/pathprintGEOData/
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