To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("msd16s")

In most cases, you don't need to download the package archive at all.

msd16s

DOI: 10.18129/B9.bioc.msd16s    

Healthy and moderate to severe diarrhea 16S expression data

Bioconductor version: Release (3.6)

Gut 16S sequencing expression data from 992 healthy and moderate-to-severe diarrhetic samples used in 'Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition'.

Author: Joseph N. Paulson, Hector Corrada Bravo, Mihai Pop

Maintainer: Joseph N. Paulson <jpaulson at umiacs.umd.edu>

Citation (from within R, enter citation("msd16s")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("msd16s")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("msd16s")

 

PDF R Script msd16s
PDF   Reference Manual
Text   NEWS

Details

biocViews ExperimentData, MicrobiomeData, SequencingData
Version 0.112.0
License Artistic-2.0
Depends R (>= 2.10), Biobase, metagenomeSeq
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://www.cbcb.umd.edu/research/projects/GEMS-pathogen-discovery
Depends On Me
Imports Me
Suggests Me metagenomeFeatures, metavizr
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package msd16s_0.112.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/msd16s
Package Short Url http://bioconductor.org/packages/msd16s/
Package Downloads Report Download Stats

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