mosaicsExample

DOI: 10.18129/B9.bioc.mosaicsExample    

Example data for the mosaics package, which implements MOSAiCS and MOSAiCS-HMM, a statistical framework to analyze one-sample or two-sample ChIP-seq data for transcription factor binding and histone modification

Bioconductor version: Release (3.8)

Data for the mosaics package, consisting of (1) chromosome 22 ChIP and control sample data from a ChIP-seq experiment of STAT1 binding and H3K4me3 modification in MCF7 cell line from ENCODE database (HG19) and (2) chromosome 21 ChIP and control sample data from a ChIP-seq experiment of STAT1 binding, with mappability, GC content, and sequence ambiguity scores of human genome HG18.

Author: Dongjun Chung, Pei Fen Kuan, Rene Welch, Sunduz Keles

Maintainer: Dongjun Chung <dongjun.chung at gmail.com>

Citation (from within R, enter citation("mosaicsExample")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("mosaicsExample", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews ChIPseqData, ExperimentData, Homo_sapiens
Version 1.20.0
License GPL (>= 2)
Depends R (>= 2.11.1)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://groups.google.com/group/mosaics_user_group
Depends On Me
Imports Me
Suggests Me mosaics
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package mosaicsExample_1.20.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/mosaicsExample
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mosaicsExample
Package Short Url http://bioconductor.org/packages/mosaicsExample/
Package Downloads Report Download Stats

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