lumiBarnes

DOI: 10.18129/B9.bioc.lumiBarnes    

Barnes Benchmark Illumina Tissues Titration Data

Bioconductor version: Release (3.7)

The Barnes benchmark dataset can be used to evaluate the algorithms for Illumina microarrays. It measured a titration series of two human tissues, blood and placenta, and includes six samples with the titration ratio of blood and placenta as 100:0, 95:5, 75:25, 50:50, 25:75 and 0:100. The samples were hybridized on HumanRef-8 BeadChip (Illumina, Inc) in duplicate. The data is loaded as an LumiBatch Object (see documents in the lumi package).

Author: Pan Du

Maintainer: Pan Du <dupan at northwestern.edu>

Citation (from within R, enter citation("lumiBarnes")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("lumiBarnes")

Documentation

PDF   Reference Manual

Details

biocViews ChipOnChipData, ExperimentData, MicroarrayData, Tissue
Version 1.20.0
License LGPL
Depends R (>= 2.0), Biobase(>= 2.5.5), lumi(>= 1.1.0)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me arrayMvout, lumi
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package lumiBarnes_1.20.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/lumiBarnes
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/lumiBarnes
Package Short Url http://bioconductor.org/packages/lumiBarnes/
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