To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("furrowSeg")

In most cases, you don't need to download the package archive at all.

furrowSeg

DOI: 10.18129/B9.bioc.furrowSeg    

Furrow Segmentation

Bioconductor version: Release (3.5)

Image feature data and analysis codes for the Guglielmi, Barry et al. paper describing the application of an optogenetics tools to disrupt Drosophila embryo furrowing.

Author: Joseph Barry

Maintainer: Joseph Barry <joseph.barry at embl.de>

Citation (from within R, enter citation("furrowSeg")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("furrowSeg")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("furrowSeg")

 

PDF R Script Supplementary Methods - Automatic generation of paper figures
PDF R Script Supplementary Methods - Example furrow segmentation
PDF   Reference Manual

Details

biocViews Drosophila_melanogaster_Data, ExperimentData, ReproducibleResearch, Tissue
Version 1.4.0
License Artistic-2.0
Depends R (>= 3.3), EBImage
Imports abind, dplyr, locfit, tiff
LinkingTo
Suggests BiocStyle, ggplot2, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package furrowSeg_1.4.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/furrowSeg
Package Short Url http://bioconductor.org/packages/furrowSeg/
Package Downloads Report Download Stats

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