To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("etec16s")

In most cases, you don't need to download the package archive at all.

etec16s

DOI: 10.18129/B9.bioc.etec16s    

Individual-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment

Bioconductor version: Release (3.6)

16S rRNA gene sequencing data to study changes in the faecal microbiota of 12 volunteers during a human challenge study with ETEC (H10407) and subsequent treatment with ciprofloxacin.

Author: Joseph N. Paulson

Maintainer: Joseph N. Paulson <jpaulson at jimmy.harvard.edu>

Citation (from within R, enter citation("etec16s")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("etec16s")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("etec16s")

 

PDF R Script etec16s
PDF   Reference Manual
Text   NEWS

Details

biocViews ExperimentData, MicrobiomeData, SequencingData
Version 1.6.0
License Artistic-2.0
Depends R (>= 3.3), Biobase, metagenomeSeq(>= 1.12.0)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me metavizr
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package etec16s_1.6.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/etec16s
Package Short Url http://bioconductor.org/packages/etec16s/
Package Downloads Report Download Stats

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