To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("curatedTCGAData")

In most cases, you don't need to download the package archive at all.

curatedTCGAData

DOI: 10.18129/B9.bioc.curatedTCGAData    

Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

Bioconductor version: Release (3.6)

This package provides publicly available data from The Cancer Genome Atlas (TCGA) Bioconductor MultiAssayExperiment class objects. These objects integrate multiple assays (e.g. RNA-seq, copy number, mutation, microRNA, protein, and others) with clinical / pathological data. The MultiAssayExperiment class links assay barcodes with patient IDs, enabling harmonized subsetting of rows (features) and columns (patients / samples) across the entire experiment.

Author: Marcel Ramos <marcel.ramos at roswellpark.org>, Levi Waldron <lwaldron.research at gmail.com>, Lucas Schiffer <schiffer.lucas at gmail.com>, Valerie Obenchain <valerie.obenchain at roswellpark.org>, Morgan Martin <martin.morgan at roswellpark.org>

Maintainer: Marcel Ramos <marcel.ramos at roswellpark.org>

Citation (from within R, enter citation("curatedTCGAData")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("curatedTCGAData")

Documentation

HTML R Script curatedTCGAData
PDF   Reference Manual
Text   NEWS

Details

biocViews CancerData, ExperimentData, Homo_sapiens_Data, ReproducibleResearch
Version 1.0.3
License Artistic-2.0
Depends R (>= 3.4.0), MultiAssayExperiment
Imports AnnotationHub, ExperimentHub, S4Vectors, utils
LinkingTo
Suggests BiocStyle, knitr, readr, rmarkdown, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package curatedTCGAData_1.0.3.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/curatedTCGAData
Package Short Url http://bioconductor.org/packages/curatedTCGAData/
Package Downloads Report Download Stats

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