cheung2010

DOI: 10.18129/B9.bioc.cheung2010    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see cheung2010.

resources for genetics of gene expression based on Cheung et al 2010

Bioconductor version: Release (3.7)

Data resources related to the PLoS Biology paper Polymorphic Cis- and Trans-Regulation of Human Gene Expression, including small-footprint smlSet support for 147 hgfocus arrays and corresponding HapMap genotypes at 1.3 million SNP; 0.0.22+ includes cheung_eset... from Leek et al RECOUNT myrna output

Author: Vince Carey <stvjc at channing.harvard.edu>

Maintainer: Vince Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("cheung2010")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("cheung2010")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cheung2010")

 

PDF R Script cheungTrans: checking trans eQTL with hgfocus arrays
PDF   Reference Manual

Details

biocViews ExperimentData, HapMap, Homo_sapiens_Data, RNASeqData, SNPData, SequencingData
Version 0.18.0
License Artistic-2.0
Depends R (>= 2.13.0), Biobase, GGtools, GenomicRanges, hgfocus.db
Imports AnnotationDbi
LinkingTo
Suggests SNPlocs.Hsapiens.dbSNP144.GRCh37
SystemRequirements
Enhances parallel
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cheung2010_0.18.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/cheung2010
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cheung2010
Package Short Url http://bioconductor.org/packages/cheung2010/
Package Downloads Report Download Stats

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