RcisTarget.hg19.motifDBs.cisbpOnly.500bp

DOI: 10.18129/B9.bioc.RcisTarget.hg19.motifDBs.cisbpOnly.500bp    

RcisTarget motif databases for human (hg19) - Subset of 4.6k motifs

Bioconductor version: Release (3.7)

RcisTarget databases: Gene-based motif rankings and annotation to transcription factors. This package contains a subset of 4.6k motifs (cisbp motifs), scored only within 500bp upstream and the TSS. See RcisTarget tutorial to download the full databases, containing 20k motifs and search space up to 10kbp around the TSS.

Author: Sara Aibar, Gert Hulselmans, Stein Aerts. Laboratory of Computational Biology, KU Leuven Center for Human Genetics. Leuven, Belgium.

Maintainer: Sara Aibar <sara.aibar at kuleuven.vib.be>

Citation (from within R, enter citation("RcisTarget.hg19.motifDBs.cisbpOnly.500bp")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("RcisTarget.hg19.motifDBs.cisbpOnly.500bp")

Documentation

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Text   NEWS

Details

biocViews ExperimentData, Homo_sapiens_Data
Version 1.0.1
License GPL-3
Depends R (>= 3.3)
Imports data.table
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://scenic.aertslab.org
Depends On Me
Imports Me
Suggests Me RcisTarget
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RcisTarget.hg19.motifDBs.cisbpOnly.500bp_1.0.1.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/RcisTarget.hg19.motifDBs.cisbpOnly.500bp
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RcisTarget.hg19.motifDBs.cisbpOnly.500bp
Package Short Url http://bioconductor.org/packages/RcisTarget.hg19.motifDBs.cisbpOnly.500bp/
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