To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("RTCGA.mutations")

In most cases, you don't need to download the package archive at all.

RTCGA.mutations

DOI: 10.18129/B9.bioc.RTCGA.mutations    

Mutations datasets from The Cancer Genome Atlas Project

Bioconductor version: Release (3.5)

Package provides mutations datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Mutations data format is explained here https://wiki.nci.nih.gov/display/TCGA/Mutation+Annotation+Format+(MAF)+Specification. There is extra one column with patients' barcodes. Data from 2015-11-01 snapshot.

Author: Marcin Kosinski <m.p.kosinski at gmail.com>

Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>

Citation (from within R, enter citation("RTCGA.mutations")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("RTCGA.mutations")

Documentation

HTML R Script Using RTCGA to download mutations data as included in RTCGA.mutations
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation Data, ExperimentData
Version 20151101.6.0
License GPL-2
Depends R (>= 3.2.0), RTCGA
Imports
LinkingTo
Suggests knitr
SystemRequirements
Enhances
URL
BugReports https://github.com/RTCGA/RTCGA/issues
Depends On Me
Imports Me
Suggests Me RTCGA
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RTCGA.mutations_20151101.6.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/RTCGA.mutations
Package Short Url http://bioconductor.org/packages/RTCGA.mutations/
Package Downloads Report Download Stats

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