To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("RTCGA.methylation")

In most cases, you don't need to download the package archive at all.

RTCGA.methylation

DOI: 10.18129/B9.bioc.RTCGA.methylation    

Methylation datasets from The Cancer Genome Atlas Project

Bioconductor version: Release (3.6)

Package provides methylation (humanmethylation27) datasets from The Cancer Genome Atlas Project for all available cohorts types from http://gdac.broadinstitute.org/. Data format is explained here https://wiki.nci.nih.gov/display/TCGA/DNA+methylation Data from 2015-11-01 snapshot.

Author: Marcin Kosinski [aut, cre], Witold Chodor [aut]

Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>

Citation (from within R, enter citation("RTCGA.methylation")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("RTCGA.methylation")

Documentation

HTML R Script Using RTCGA to download methylation data as included in RTCGA.methylation
PDF   Reference Manual
Text   NEWS

Details

biocViews AnnotationData, ExperimentData
Version 1.6.0
License GPL-2
Depends R (>= 3.3.0), RTCGA
Imports
LinkingTo
Suggests knitr
SystemRequirements
Enhances
URL
BugReports https://github.com/RTCGA/RTCGA/issues
Depends On Me
Imports Me
Suggests Me RTCGA
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RTCGA.methylation_1.6.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/RTCGA.methylation
Package Short Url http://bioconductor.org/packages/RTCGA.methylation/
Package Downloads Report Download Stats

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