To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("NGScopyData")

In most cases, you don't need to download the package archive at all.

NGScopyData

 

   

Subset of BAM files of human tumor and pooled normal sequencing data (Zhao et al. 2014) for the NGScopy package

Bioconductor version: Release (3.5)

Subset of BAM files of human lung tumor and pooled normal samples by targeted panel sequencing. [Zhao et al 2014. Targeted Sequencing in Non-Small Cell Lung Cancer (NSCLC) Using the University of North Carolina (UNC) Sequencing Assay Captures Most Previously Described Genetic Aberrations in NSCLC. In preparation.] Each sample is a 10 percent random subsample drawn from the original sequencing data. The pooled normal sample has been rescaled accroding to the total number of normal samples in the "pool". Here provided is the subsampled data on chr6 (hg19).

Author: Xiaobei Zhao [aut, cre, cph]

Maintainer: Xiaobei Zhao <xiaobei at binf.ku.dk>

Citation (from within R, enter citation("NGScopyData")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("NGScopyData")

Documentation

PDF   Reference Manual

Details

biocViews CancerData, ExperimentData, LungCancerData, SequencingData
Version 0.110.0
License GPL (>=2)
Depends
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://www.bioconductor.org/packages/release/data/experiment/html/NGScopyData.html
Depends On Me
Imports Me
Suggests Me NGScopy
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source NGScopyData_0.110.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Subversion source (username/password: readonly)
Package Short Url http://bioconductor.org/packages/NGScopyData/
Package Downloads Report Download Stats

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