KEGGdzPathwaysGEO

DOI: 10.18129/B9.bioc.KEGGdzPathwaysGEO    

KEGG Disease Datasets from GEO

Bioconductor version: Release (3.8)

This is a collection of 24 data sets for which the phenotype is a disease with a corresponding pathway in the KEGG database.This collection of datasets were used as gold standard in comparing gene set analysis methods by the PADOG package.

Author: Gaurav Bhatti, Adi L. Tarca

Maintainer: Gaurav Bhatti <gbhatti at med.wayne.edu>

Citation (from within R, enter citation("KEGGdzPathwaysGEO")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("KEGGdzPathwaysGEO", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews ExperimentData, GEO, MicroarrayData
Version 1.20.0
License GPL-2
Depends R (>= 2.13.0)
Imports Biobase, BiocGenerics
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me PADOG
Imports Me GSEABenchmarkeR
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package KEGGdzPathwaysGEO_1.20.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/KEGGdzPathwaysGEO
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/KEGGdzPathwaysGEO
Package Short Url http://bioconductor.org/packages/KEGGdzPathwaysGEO/
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