KEGGandMetacoreDzPathwaysGEO

DOI: 10.18129/B9.bioc.KEGGandMetacoreDzPathwaysGEO    

Disease Datasets from GEO

Bioconductor version: Release (3.7)

This is a collection of 18 data sets for which the phenotype is a disease with a corresponding pathway in either KEGG or metacore database.This collection of datasets were used as gold standard in comparing gene set analysis methods.

Author: Gaurav Bhatti

Maintainer: Gaurav Bhatti <gbhatti at med.wayne.edu>

Citation (from within R, enter citation("KEGGandMetacoreDzPathwaysGEO")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("KEGGandMetacoreDzPathwaysGEO")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("KEGGandMetacoreDzPathwaysGEO")

 

PDF R Script KEGGandMetacoreDzPathwaysGEO Vignette
PDF   Reference Manual

Details

biocViews ExperimentData, GEO
Version 0.114.0
License GPL-2
Depends R (>= 2.15.0)
Imports Biobase, BiocGenerics
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me GSEABenchmarkeR
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package KEGGandMetacoreDzPathwaysGEO_0.114.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/KEGGandMetacoreDzPathwaysGEO
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/KEGGandMetacoreDzPathwaysGEO
Package Short Url http://bioconductor.org/packages/KEGGandMetacoreDzPathwaysGEO/
Package Downloads Report Download Stats

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