To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("HiCDataHumanIMR90")

In most cases, you don't need to download the package archive at all.

HiCDataHumanIMR90

DOI: 10.18129/B9.bioc.HiCDataHumanIMR90    

Human IMR90 Fibroblast HiC data from Dixon et al. 2012

Bioconductor version: Release (3.5)

The HiC data from Human Fibroblast IMR90 cell line (HindIII restriction) was retrieved from the GEO website, accession number GSE35156 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE35156). The raw reads were processed as explained in Dixon et al. (Nature 2012).

Author: Nicolas Servant

Maintainer: Nicolas Servant <Nicolas.Servant at curie.fr>

Citation (from within R, enter citation("HiCDataHumanIMR90")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("HiCDataHumanIMR90")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HiCDataHumanIMR90")

 

PDF R Script HiC Data Human Fibroblast Dixon et al. 2012
PDF   Reference Manual

Details

biocViews ExperimentData, GEO, Genome, Homo_sapiens_Data
Version 0.110.0
License GPL-3
Depends R (>= 2.10)
Imports
LinkingTo
Suggests HiTC
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me HiTC
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HiCDataHumanIMR90_0.110.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/HiCDataHumanIMR90
Package Short Url http://bioconductor.org/packages/HiCDataHumanIMR90/
Package Downloads Report Download Stats

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