To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("HarmonizedTCGAData")

In most cases, you don't need to download the package archive at all.

HarmonizedTCGAData

DOI: 10.18129/B9.bioc.HarmonizedTCGAData    

Processed Harmonized TCGA Data of Five Selected Cancer Types

Bioconductor version: Release (3.6)

This package contains the processed harmonized TCGA data of five cancer types used in "Tianle Ma and Aidong Zhang, Integrate Multi-omic Data Using Affinity Network Fusion (ANF) for Cancer Patient Clustering".

Author: Tianle Ma

Maintainer: Tianle Ma <tianlema at buffalo.edu>

Citation (from within R, enter citation("HarmonizedTCGAData")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("HarmonizedTCGAData")

Documentation

HTML R Script Patient Affinity Matrices Derived from Harmonized TCGA Dataset
PDF   Reference Manual
Text   NEWS

Details

biocViews CancerData, ExperimentData, ReproducibleResearch
Version 1.0.0
License GPL-3
Depends R (>= 3.4.0)
Imports ExperimentHub
LinkingTo
Suggests AnnotationHub, knitr, rmarkdown, igraph, survival, ANF, stats, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HarmonizedTCGAData_1.0.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/HarmonizedTCGAData
Package Short Url http://bioconductor.org/packages/HarmonizedTCGAData/
Package Downloads Report Download Stats

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