To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("DAPARdata")

In most cases, you don't need to download the package archive at all.

DAPARdata

 

Data accompanying the DAPAR and Prostar packages

Bioconductor version: Release (3.5)

Mass-spectrometry based UPS proteomics data sets from Ramus C, Hovasse A, Marcellin M, Hesse AM, Mouton-Barbosa E, Bouyssie D, Vaca S, Carapito C, Chaoui K, Bruley C, Garin J, Cianferani S, Ferro M, Dorssaeler AV, Burlet-Schiltz O, Schaeffer C, Coute Y, Gonzalez de Peredo A. Spiked proteomic standard dataset for testing label-free quantitative software and statistical methods. Data Brief. 2015 Dec 17;6:286-94 and Giai Gianetto, Q., Combes, F., Ramus, C., Bruley, C., Coute, Y., Burger, T. (2016). Calibration plot for proteomics: A graphical tool to visually check the assumptions underlying FDR control in quantitative experiments. Proteomics, 16(1), 29-32.

Author: Samuel Wieczorek and Florence Combes

Maintainer: Samuel Wieczorek <samuel.wieczorek at cea.fr>

Citation (from within R, enter citation("DAPARdata")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("DAPARdata")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DAPARdata")

 

PDF Exp1_R25_pept.pdf
PDF Exp1_R25_prot.pdf
PDF Exp1_R2_pept.pdf
PDF Exp1_R2_prot.pdf
PDF Exp2_R100_pept.pdf
PDF Exp2_R100_prot.pdf
PDF Exp2_R10_pept.pdf
PDF Exp2_R10_prot.pdf
PDF Exp2_R2_pept.pdf
PDF Exp2_R2_prot.pdf
PDF   Reference Manual
Text   NEWS

Details

biocViews ExperimentData, MassSpectrometryData
Version 1.4.0
License GPL-2
Depends R (>= 3.3)
Imports utils, knitr, MSnbase
LinkingTo
Suggests DAPAR, Prostar
SystemRequirements
Enhances
URL
Depends On Me
Imports Me DAPAR, Prostar
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source DAPARdata_1.4.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/DAPARdata
Package Short Url http://bioconductor.org/packages/DAPARdata/
Package Downloads Report Download Stats

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