CopyhelpeR

DOI: 10.18129/B9.bioc.CopyhelpeR    

Helper files for CopywriteR

Bioconductor version: Release (3.7)

This package contains the helper files that are required to run the Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content and mappability files for the reference genomes hg18, hg19, hg38, mm9 and mm10. In addition, it contains a blacklist filter to remove regions that display CNV. Files are stored as GRanges objects from the GenomicRanges Bioconductor package.

Author: Thomas Kuilman

Maintainer: Thomas Kuilman <t.kuilman at nki.nl>

Citation (from within R, enter citation("CopyhelpeR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("CopyhelpeR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CopyhelpeR")

 

PDF R Script CopyhelpeR
PDF   Reference Manual
Text   NEWS

Details

biocViews ExperimentData, GenomicSequence, Homo_sapiens
Version 1.12.0
License GPL-2
Depends R (>= 2.10)
Imports
LinkingTo
Suggests BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me CopywriteR
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CopyhelpeR_1.12.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/CopyhelpeR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CopyhelpeR
Package Short Url http://bioconductor.org/packages/CopyhelpeR/
Package Downloads Report Download Stats

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