tenXplore

DOI: 10.18129/B9.bioc.tenXplore    

ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics

Bioconductor version: Release (3.8)

Perform ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics.

Author: Vince Carey

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("tenXplore")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("tenXplore", version = "3.8")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tenXplore")

 

PDF R Script tenXplore: ontology for scRNA-seq, applied to 10x 1.3 million neurons
PDF   Reference Manual

Details

biocViews DimensionReduction, PrincipalComponent, SingleCell, Software, Transcriptomics
Version 1.4.0
License Artistic-2.0
Depends R (>= 3.4), shiny, restfulSE(>= 0.99.12)
Imports methods, ontoProc(>= 0.99.7), SummarizedExperiment, AnnotationDbi, matrixStats, org.Mm.eg.db, stats, utils
LinkingTo
Suggests org.Hs.eg.db, testthat, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tenXplore_1.4.0.tar.gz
Windows Binary tenXplore_1.4.0.zip
Mac OS X 10.11 (El Capitan) tenXplore_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/tenXplore
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tenXplore
Package Short Url http://bioconductor.org/packages/tenXplore/
Package Downloads Report Download Stats

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