sigaR

DOI: 10.18129/B9.bioc.sigaR    

Statistics for Integrative Genomics Analyses in R

Bioconductor version: Release (3.8)

Facilitates the joint analysis of high-throughput data from multiple molecular levels. Contains functions for manipulation of objects, various analysis types, and some visualization.

Author: Wessel N. van Wieringen <w.vanwieringen at vumc.nl>

Maintainer: Wessel N. van Wieringen <w.vanwieringen at vumc.nl>

Citation (from within R, enter citation("sigaR")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("sigaR", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sigaR")

 

PDF R Script sigaR
PDF   Reference Manual

Details

biocViews DifferentialExpression, GeneExpression, Microarray, Pathways, Software, aCGH
Version 1.30.0
In Bioconductor since BioC 2.10 (R-2.15) (6.5 years)
License GPL (>= 2)
Depends Biobase, CGHbase, methods, mvtnorm
Imports corpcor (>= 1.6.2), graphics, igraph, limma, marray, MASS, penalized, quadprog, snowfall, stats
LinkingTo
Suggests CGHcall
SystemRequirements
Enhances
URL http://www.few.vu.nl/~wvanwie
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package sigaR_1.30.0.tar.gz
Windows Binary sigaR_1.30.0.zip
Mac OS X 10.11 (El Capitan) sigaR_1.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/sigaR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/sigaR
Package Short Url http://bioconductor.org/packages/sigaR/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: