pogos

DOI: 10.18129/B9.bioc.pogos    

PharmacOGenomics Ontology Support

Bioconductor version: Release (3.8)

Provide simple utilities for querying bhklab PharmacoDB, modeling API outputs, and integrating to cell and compound ontologies.

Author: Vince Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("pogos")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("pogos", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pogos")

 

HTML R Script pogos -- simple interface to bhklab PharmacoDB with emphasis on ontology
PDF   Reference Manual

Details

biocViews Pharmacogenomics, PooledScreens, Software
Version 1.2.0
License Artistic-2.0
Depends R (>= 3.5.0), rjson (>= 0.2.15), httr (>= 1.3.1)
Imports methods, S4Vectors, utils, shiny, ontoProc, ggplot2, graphics
LinkingTo
Suggests knitr, DT, ontologyPlot, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me BiocOncoTK
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package pogos_1.2.0.tar.gz
Windows Binary pogos_1.2.0.zip
Mac OS X 10.11 (El Capitan) pogos_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/pogos
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pogos
Package Short Url http://bioconductor.org/packages/pogos/
Package Downloads Report Download Stats

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