miRLAB

DOI: 10.18129/B9.bioc.miRLAB    

Dry lab for exploring miRNA-mRNA relationships

Bioconductor version: Release (3.8)

Provide tools exploring miRNA-mRNA relationships, including popular miRNA target prediction methods, ensemble methods that integrate individual methods, functions to get data from online resources, functions to validate the results, and functions to conduct enrichment analyses.

Author: Thuc Duy Le, Junpeng Zhang, Mo Chen, Vu Viet Hoang Pham

Maintainer: Thuc Duy Le <Thuc.Le at unisa.edu.au>

Citation (from within R, enter citation("miRLAB")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("miRLAB", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miRLAB")

 

HTML R Script miRLAB
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneExpression, Network, NetworkInference, Software, miRNA
Version 1.12.0
In Bioconductor since BioC 3.2 (R-3.2) (3 years)
License GPL (>=2)
Depends
Imports methods, stats, utils, RCurl, httr, stringr, Hmisc, energy, entropy, Roleswitch, gplots, glmnet, impute, limma, pcalg, TCGAbiolinks, dplyr, SummarizedExperiment, ctc, heatmap.plus, InvariantCausalPrediction, Category, GOstats, org.Hs.eg.db
LinkingTo
Suggests knitr, BiocGenerics, AnnotationDbi, RUnit
SystemRequirements
Enhances
URL https://github.com/pvvhoang/miRLAB
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package miRLAB_1.12.0.tar.gz
Windows Binary miRLAB_1.12.0.zip
Mac OS X 10.11 (El Capitan) miRLAB_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/miRLAB
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/miRLAB
Package Short Url http://bioconductor.org/packages/miRLAB/
Package Downloads Report Download Stats

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