methimpute

DOI: 10.18129/B9.bioc.methimpute    

Imputation-guided re-construction of complete methylomes from WGBS data

Bioconductor version: Release (3.8)

This package implements functions for calling methylation for all cytosines in the genome.

Author: Aaron Taudt

Maintainer: Aaron Taudt <aaron.taudt at gmail.com>

Citation (from within R, enter citation("methimpute")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("methimpute", version = "3.8")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methimpute")

 

PDF R Script Methylation status calling with METHimpute
PDF   Reference Manual
Text   NEWS

Details

biocViews Coverage, DNAMethylation, Epigenetics, HiddenMarkovModel, Sequencing, Software
Version 1.4.0
License Artistic-2.0
Depends R (>= 3.4.0), GenomicRanges, ggplot2
Imports Rcpp (>= 0.12.4.5), methods, utils, grDevices, stats, GenomeInfoDb, IRanges, Biostrings, reshape2, minpack.lm, data.table
LinkingTo Rcpp
Suggests knitr, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package methimpute_1.4.0.tar.gz
Windows Binary methimpute_1.4.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) methimpute_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/methimpute
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/methimpute
Package Short Url http://bioconductor.org/packages/methimpute/
Package Downloads Report Download Stats

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