ldblock

DOI: 10.18129/B9.bioc.ldblock    

data structures for linkage disequilibrium measures in populations

Bioconductor version: Release (3.8)

Define data structures for linkage disequilibrium measures in populations.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("ldblock")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("ldblock", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ldblock")

 

PDF R Script LD block import and manipulation
PDF   Reference Manual
Text   NEWS

Details

biocViews Software
Version 1.12.0
In Bioconductor since BioC 3.2 (R-3.2) (3 years)
License Artistic-2.0
Depends R (>= 3.1), methods, Homo.sapiens
Imports Matrix, snpStats, erma, VariantAnnotation, GenomeInfoDb, Rsamtools, GO.db, GenomicFiles(>= 1.13.6), BiocGenerics(>= 0.25.1)
LinkingTo
Suggests RUnit, BiocGenerics, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me gQTLstats
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ldblock_1.12.0.tar.gz
Windows Binary ldblock_1.12.0.zip
Mac OS X 10.11 (El Capitan) ldblock_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ldblock
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ldblock
Package Short Url http://bioconductor.org/packages/ldblock/
Package Downloads Report Download Stats

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