genphen

DOI: 10.18129/B9.bioc.genphen    

A tool for quantification of associations between genotypes and phenotypes with Bayesian inference and statistical learning techniques

Bioconductor version: Release (3.8)

Genetic association studies are an essential tool for studying the relationship between genotypes and phenotypes. With genphen we can quantify the association between genotypes and phenotypes using a hybrid method which uses statistical learning techniques such as random forest and support vector machines, and Bayesian inference using hierarchical models.

Author: Simo Kitanovski

Maintainer: Simo Kitanovski <simo.kitanovski at uni-due.de>

Citation (from within R, enter citation("genphen")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("genphen", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("genphen")

 

PDF R Script genphen overview
PDF   Reference Manual
Text   NEWS

Details

biocViews Bayesian, Classification, FeatureExtraction, Genetics, GenomeWideAssociation, Regression, SequenceMatching, Sequencing, Software, SupportVectorMachine
Version 1.10.0
In Bioconductor since BioC 3.3 (R-3.3) (2.5 years)
License GPL (>= 2)
Depends R (>= 3.5), stats, graphics, e1071, Biostrings, rstan, ranger, parallel, foreach, doParallel
Imports
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Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package genphen_1.10.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) genphen_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/genphen
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/genphen
Package Short Url http://bioconductor.org/packages/genphen/
Package Downloads Report Download Stats

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