To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("genefu")

In most cases, you don't need to download the package archive at all.

genefu

DOI: 10.18129/B9.bioc.genefu    

Computation of Gene Expression-Based Signatures in Breast Cancer

Bioconductor version: Release (3.6)

Description: This package contains functions implementing various tasks usually required by gene expression analysis, especially in breast cancer studies: gene mapping between different microarray platforms, identification of molecular subtypes, implementation of published gene signatures, gene selection, and survival analysis.

Author: Deena M.A. Gendoo, Natchar Ratanasirigulchai, Markus S. Schroder, Laia Pare, Joel S. Parker, Aleix Prat, and Benjamin Haibe-Kains

Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains at utoronto.ca>, Markus Schroeder <markus.schroeder at ucdconnect.ie>

Citation (from within R, enter citation("genefu")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("genefu")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("genefu")

 

PDF R Script genefu An Introduction (HowTo)
PDF   Reference Manual
Text   README

Details

biocViews Classification, Clustering, DifferentialExpression, GeneExpression, Software, Visualization
Version 2.10.0
In Bioconductor since BioC 2.8 (R-2.13) (6.5 years)
License Artistic-2.0
Depends survcomp, mclust, limma, biomaRt, iC10, AIMS, R (>= 2.10)
Imports amap
LinkingTo
Suggests GeneMeta, breastCancerVDX, breastCancerMAINZ, breastCancerTRANSBIG, breastCancerUPP, breastCancerUNT, breastCancerNKI, rmeta, Biobase, xtable, knitr, caret, survival
SystemRequirements
Enhances
URL http://www.pmgenomics.ca/bhklab/software/genefu
Depends On Me pbcmc
Imports Me consensusOV
Suggests Me breastCancerMAINZ, breastCancerNKI, breastCancerTRANSBIG, breastCancerUNT, breastCancerUPP, breastCancerVDX
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package genefu_2.10.0.tar.gz
Windows Binary genefu_2.10.0.zip
Mac OS X 10.11 (El Capitan) genefu_2.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/genefu
Package Short Url http://bioconductor.org/packages/genefu/
Package Downloads Report Download Stats

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