gaucho

DOI: 10.18129/B9.bioc.gaucho    

Genetic Algorithms for Understanding Clonal Heterogeneity and Ordering

Bioconductor version: Release (3.7)

Use genetic algorithms to determine the relationship between clones in heterogenous populations such as cancer sequencing samples

Author: Alex Murison [aut, cre], Christopher Wardell [aut, cre]

Maintainer: Alex Murison <Alexander.Murison at icr.ac.uk>, Christopher Wardell <Christopher.Wardell at icr.ac.uk>

Citation (from within R, enter citation("gaucho")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("gaucho")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gaucho")

 

PDF R Script An introduction to gaucho
PDF   Reference Manual
Text   NEWS

Details

biocViews Genetics, SNP, Sequencing, Software, SomaticMutation
Version 1.16.0
In Bioconductor since BioC 2.14 (R-3.1) (4.5 years)
License GPL-3
Depends R (>= 3.0.0), compiler, GA, graph, heatmap.plus, png, Rgraphviz
Imports
LinkingTo
Suggests knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package gaucho_1.16.0.tar.gz
Windows Binary gaucho_1.16.0.zip
Mac OS X 10.11 (El Capitan) gaucho_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/gaucho
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gaucho
Package Short Url http://bioconductor.org/packages/gaucho/
Package Downloads Report Download Stats

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