gQTLstats

DOI: 10.18129/B9.bioc.gQTLstats    

gQTLstats: computationally efficient analysis for eQTL and allied studies

Bioconductor version: Release (3.8)

computationally efficient analysis of eQTL, mQTL, dsQTL, etc.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("gQTLstats")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("gQTLstats", version = "3.8")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gQTLstats")

 

HTML R Script gQTLstats: statistics for genetics of genomic features
PDF   Reference Manual
Text   NEWS

Details

biocViews Software
Version 1.14.0
In Bioconductor since BioC 3.1 (R-3.2) (3.5 years)
License Artistic-2.0
Depends R (>= 3.1.0), Homo.sapiens
Imports methods, snpStats, BiocGenerics, S4Vectors(>= 0.9.25), IRanges, GenomeInfoDb, GenomicFiles, GenomicRanges, SummarizedExperiment, VariantAnnotation, Biobase, BatchJobs, gQTLBase, limma, mgcv, dplyr, AnnotationDbi, GenomicFeatures, ggplot2, reshape2, doParallel, foreach, ffbase, BBmisc, beeswarm, HardyWeinberg, graphics, stats, utils, shiny, plotly, erma, ggbeeswarm
LinkingTo
Suggests geuvPack, geuvStore2, Rsamtools, knitr, rmarkdown, ggbio, BiocStyle, RUnit, multtest, gwascat, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene, ldblock
SystemRequirements
Enhances
URL
Depends On Me
Imports Me gwascat
Suggests Me yriMulti
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package gQTLstats_1.14.0.tar.gz
Windows Binary gQTLstats_1.14.0.zip
Mac OS X 10.11 (El Capitan) gQTLstats_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/gQTLstats
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gQTLstats
Package Short Url http://bioconductor.org/packages/gQTLstats/
Package Downloads Report Download Stats

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