To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("funtooNorm")

In most cases, you don't need to download the package archive at all.

funtooNorm

DOI: 10.18129/B9.bioc.funtooNorm    

Normalization Procedure for Infinium HumanMethylation450 BeadChip Kit

Bioconductor version: Release (3.5)

Provides a function to normalize Illumina Infinium Human Methylation 450 BeadChip (Illumina 450K), correcting for tissue and/or cell type.

Author: Celia Greenwood <celia.greenwood at mcgill.ca>,Stepan Grinek <stepan.grinek at ladydavis.ca>, Maxime Turgeon <maxime.turgeon at mail.mcgill.ca>, Kathleen Klein <kathleen.klein at mail.mcgill.ca>

Maintainer: Kathleen Klein <kathleen.klein at mail.mcgill.ca>

Citation (from within R, enter citation("funtooNorm")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("funtooNorm")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("funtooNorm")

 

PDF R Script Normalizing Illumina Infinium Human Methylation 450k for multiple cell types with funtooNorm
PDF   Reference Manual
Text   NEWS

Details

biocViews DNAMethylation, Normalization, Preprocessing, Software
Version 1.0.0
In Bioconductor since BioC 3.5 (R-3.4) (< 6 months)
License GPL-3
Depends R (>= 3.4)
Imports pls, matrixStats, minfi, methods, IlluminaHumanMethylation450kmanifest, IlluminaHumanMethylation450kanno.ilmn12.hg19, GenomeInfoDb, grDevices, graphics, stats
LinkingTo
Suggests BiocStyle, minfiData, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package funtooNorm_1.0.0.tar.gz
Windows Binary funtooNorm_1.0.0.zip
Mac OS X 10.11 (El Capitan) funtooNorm_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/funtooNorm
Package Short Url http://bioconductor.org/packages/funtooNorm/
Package Downloads Report Download Stats

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