flowPeaks

DOI: 10.18129/B9.bioc.flowPeaks    

An R package for flow data clustering

Bioconductor version: Release (3.8)

A fast and automatic clustering to classify the cells into subpopulations based on finding the peaks from the overall density function generated by K-means.

Author: Yongchao Ge<yongchao.ge at gmail.com>

Maintainer: Yongchao Ge<yongchao.ge at gmail.com>

Citation (from within R, enter citation("flowPeaks")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("flowPeaks", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowPeaks")

 

PDF R Script Tutorial of flowPeaks package
PDF   Reference Manual
Text   README

Details

biocViews Clustering, FlowCytometry, Gating, Software
Version 1.28.0
In Bioconductor since BioC 2.11 (R-2.15) (6 years)
License Artistic-1.0
Depends R (>= 2.12.0)
Imports
LinkingTo
Suggests
SystemRequirements gsl
Enhances flowCore
URL
Depends On Me
Imports Me CONFESS, ddPCRclust
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowPeaks_1.28.0.tar.gz
Windows Binary flowPeaks_1.28.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) flowPeaks_1.28.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowPeaks
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowPeaks
Package Short Url http://bioconductor.org/packages/flowPeaks/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: