To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("esetVis")

In most cases, you don't need to download the package archive at all.

esetVis

 

   

Visualizations of expressionSet Bioconductor object

Bioconductor version: Release (3.5)

Utility functions for visualization of expressionSet (or SummarizedExperiment) Bioconductor object, including spectral map, tsne and linear discriminant analysis. Static plot via the ggplot2 package or interactive via the ggvis or rbokeh packages are available.

Author: Laure Cougnaud <laure.cougnaud at openanalytics.eu>

Maintainer: Laure Cougnaud <laure.cougnaud at openanalytics.eu>

Citation (from within R, enter citation("esetVis")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("esetVis")

Documentation

HTML R Script esetVis package
PDF   Reference Manual
Text   NEWS

Details

biocViews DataRepresentation, DimensionReduction, Pathways, PrincipalComponent, Software, Visualization
Version 1.2.0
In Bioconductor since BioC 3.4 (R-3.3) (0.5 years)
License GPL-3
Depends
Imports mpm, hexbin, Rtsne, MLP, grid, Biobase, MASS, stats, utils, grDevices
LinkingTo
Suggests ggplot2, ggvis, rbokeh, ggrepel, knitr, rmarkdown, ALL, hgu95av2.db, AnnotationDbi, pander, SummarizedExperiment
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source esetVis_1.2.0.tar.gz
Windows Binary esetVis_1.2.0.zip
Mac OS X 10.11 (El Capitan) esetVis_1.2.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/esetVis/tree/release-3.5
Package Short Url http://bioconductor.org/packages/esetVis/
Package Downloads Report Download Stats

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