enrichplot

DOI: 10.18129/B9.bioc.enrichplot    

Visualization of Functional Enrichment Result

Bioconductor version: Release (3.8)

The 'enrichplot' package implements several visualization methods for interpreting functional enrichment results obtained from ORA or GSEA analysis. All the visualization methods are developed based on 'ggplot2' graphics.

Author: Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>)

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("enrichplot")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("enrichplot", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("enrichplot")

 

HTML R Script enrichplot introduction
PDF   Reference Manual

Details

biocViews Annotation, GO, GeneSetEnrichment, KEGG, Pathways, Software, Visualization
Version 1.2.0
License Artistic-2.0
Depends R (>= 3.4.0)
Imports AnnotationDbi, cowplot, DOSE(>= 3.5.1), europepmc, ggplot2, ggplotify, ggraph, ggridges, GOSemSim, graphics, grDevices, grid, gridExtra, igraph, methods, purrr, RColorBrewer, reshape2, stats, UpSetR, utils
LinkingTo
Suggests clusterProfiler, knitr, org.Hs.eg.db, prettydoc
SystemRequirements
Enhances
URL https://github.com/GuangchuangYu/enrichplot
BugReports https://github.com/GuangchuangYu/enrichplot/issues
Depends On Me
Imports Me ChIPseeker, clusterProfiler, debrowser, meshes, ReactomePA
Suggests Me methylGSA
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package enrichplot_1.2.0.tar.gz
Windows Binary enrichplot_1.2.0.zip
Mac OS X 10.11 (El Capitan) enrichplot_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/enrichplot
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/enrichplot
Package Short Url http://bioconductor.org/packages/enrichplot/
Package Downloads Report Download Stats

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