domainsignatures

DOI: 10.18129/B9.bioc.domainsignatures    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see domainsignatures.

Geneset enrichment based on InterPro domain signatures

Bioconductor version: Release (3.7)

Find significantly enriched gene classifications in a list of functionally undescribed genes based on their InterPro domain structure.

Author: Florian Hahne, Tim Beissbarth

Maintainer: Florian Hahne <florian.hahne at novartis.com>

Citation (from within R, enter citation("domainsignatures")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("domainsignatures")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("domainsignatures")

 

PDF R Script Gene set enrichment using InterPro domain signatures
PDF   Reference Manual

Details

biocViews Annotation, GeneSetEnrichment, Pathways, Software
Version 1.37.2
In Bioconductor since BioC 2.3 (R-2.8) (10 years)
License Artistic-2.0
Depends R (>= 2.4.0), KEGG.db, prada, biomaRt, methods
Imports AnnotationDbi
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package domainsignatures_1.37.2.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) domainsignatures_1.37.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/domainsignatures
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/domainsignatures
Package Short Url http://bioconductor.org/packages/domainsignatures/
Package Downloads Report Download Stats

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