destiny

DOI: 10.18129/B9.bioc.destiny    

Creates diffusion maps

Bioconductor version: Release (3.8)

Create and plot diffusion maps.

Author: Philipp Angerer [cre, aut] (<https://orcid.org/0000-0002-0369-2888>), Laleh Haghverdi [ctb], Maren Büttner [ctb] (<https://orcid.org/0000-0002-6189-3792>), Fabian Theis [ctb] (<https://orcid.org/0000-0002-2419-1943>), Carsten Marr [ctb] (<https://orcid.org/0000-0003-2154-4552>), Florian Büttner [ctb] (<https://orcid.org/0000-0001-5587-6761>)

Maintainer: Philipp Angerer <philipp.angerer at helmholtz-muenchen.de>

Citation (from within R, enter citation("destiny")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("destiny", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("destiny")

 

PDF Diffusion-Map-recap.pdf
PDF Diffusion-Maps.pdf
PDF DPT.pdf
PDF Global-Sigma.pdf
PDF tidyverse.pdf
PDF   Reference Manual
Text   NEWS

Details

biocViews CellBasedAssays, CellBiology, Clustering, Software, Visualization
Version 2.12.0
In Bioconductor since BioC 3.2 (R-3.2) (3 years)
License GPL
Depends R (>= 3.3.0)
Imports methods, graphics, grDevices, utils, stats, Matrix, Rcpp (>= 0.10.3), RcppEigen, Biobase, BiocGenerics, SummarizedExperiment, ggplot2, ggthemes, VIM, proxy, igraph, smoother, scales, scatterplot3d
LinkingTo Rcpp, RcppEigen, grDevices
Suggests nbconvertR, testthat, FNN, tidyr, SingleCellExperiment
SystemRequirements C++11
Enhances rgl, SingleCellExperiment
URL https://github.com/theislab/destiny
BugReports https://github.com/theislab/destiny/issues
Depends On Me simpleSingleCell
Imports Me
Suggests Me CellTrails, monocle, scater, slingshot
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package destiny_2.12.0.tar.gz
Windows Binary destiny_2.12.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) destiny_2.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/destiny
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/destiny
Package Short Url http://bioconductor.org/packages/destiny/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: