To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("derfinderPlot")

In most cases, you don't need to download the package archive at all.

derfinderPlot

 

   

Plotting functions for derfinder

Bioconductor version: Release (3.5)

This package provides plotting functions for results from the derfinder package.

Author: Leonardo Collado-Torres [aut, cre], Andrew E. Jaffe [aut], Jeffrey T. Leek [aut, ths]

Maintainer: Leonardo Collado-Torres <lcollado at jhu.edu>

Citation (from within R, enter citation("derfinderPlot")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("derfinderPlot")

Documentation

HTML R Script Introduction to derfinderPlot
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, RNASeq, Sequencing, Software, Visualization
Version 1.10.0
In Bioconductor since BioC 3.0 (R-3.1) (2.5 years)
License Artistic-2.0
Depends R (>= 3.2)
Imports derfinder(>= 1.1.0), GenomeInfoDb(>= 1.3.3), GenomicFeatures, GenomicRanges(>= 1.17.40), ggbio(>= 1.13.13), ggplot2, graphics, grDevices, IRanges(>= 1.99.28), limma, methods, plyr, RColorBrewer, reshape2, S4Vectors(>= 0.9.38), scales, utils
LinkingTo
Suggests biovizBase, bumphunter(>= 1.7.6), derfinderData(>= 0.99.0), devtools (>= 1.6), knitcitations (>= 1.0.1), knitr (>= 1.6), BiocStyle(>= 2.3.12), org.Hs.eg.db, rmarkdown (>= 0.3.3), testthat, TxDb.Hsapiens.UCSC.hg19.knownGene
SystemRequirements
Enhances
URL https://github.com/leekgroup/derfinderPlot
BugReports https://support.bioconductor.org/t/derfinderPlot
Depends On Me
Imports Me
Suggests Me derfinder, regionReport
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source derfinderPlot_1.10.0.tar.gz
Windows Binary derfinderPlot_1.10.0.zip
Mac OS X 10.11 (El Capitan) derfinderPlot_1.10.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/derfinderPlot/tree/release-3.5
Package Short Url http://bioconductor.org/packages/derfinderPlot/
Package Downloads Report Download Stats

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