ddPCRclust

DOI: 10.18129/B9.bioc.ddPCRclust    

Clustering algorithm for ddPCR data

Bioconductor version: Release (3.7)

The ddPCRclust algorithm can automatically quantify the CPDs of non-orthogonal ddPCR reactions with up to four targets. In order to determine the correct droplet count for each target, it is crucial to both identify all clusters and label them correctly based on their position. For more information on what data can be analyzed and how a template needs to be formatted, please check the vignette.

Author: Benedikt G. Brink [aut, cre], Justin Meskas [ctb], Ryan R. Brinkman [ctb]

Maintainer: Benedikt G. Brink <bbrink at cebitec.uni-bielefeld.de>

Citation (from within R, enter citation("ddPCRclust")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("ddPCRclust")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ddPCRclust")

 

PDF R Script Bioconductor LaTeX Style
PDF   Reference Manual
Text   NEWS

Details

biocViews Clustering, Software, ddPCR
Version 1.0.1
License Artistic-2.0
Depends R (>= 3.5)
Imports plotrix, clue, parallel, ggplot2, openxlsx, R.utils, flowCore, flowDensity(>= 1.13.3), SamSPECTRAL, flowPeaks
LinkingTo
Suggests BiocStyle
SystemRequirements
Enhances
URL https://github.com/bgbrink/ddPCRclust
BugReports https://github.com/bgbrink/ddPCRclust/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ddPCRclust_1.0.1.tar.gz
Windows Binary ddPCRclust_1.0.1.zip
Mac OS X 10.11 (El Capitan) ddPCRclust_1.0.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/ddPCRclust
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ddPCRclust
Package Short Url http://bioconductor.org/packages/ddPCRclust/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive

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