To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("dcGSA")

In most cases, you don't need to download the package archive at all.

dcGSA

DOI: 10.18129/B9.bioc.dcGSA    

Distance-correlation based Gene Set Analysis for longitudinal gene expression profiles

Bioconductor version: Release (3.6)

Distance-correlation based Gene Set Analysis for longitudinal gene expression profiles. In longitudinal studies, the gene expression profiles were collected at each visit from each subject and hence there are multiple measurements of the gene expression profiles for each subject. The dcGSA package could be used to assess the associations between gene sets and clinical outcomes of interest by fully taking advantage of the longitudinal nature of both the gene expression profiles and clinical outcomes.

Author: Jiehuan Sun [aut, cre], Jose Herazo-Maya [aut], Xiu Huang [aut], Naftali Kaminski [aut], and Hongyu Zhao [aut]

Maintainer: Jiehuan sun <jiehuan.sun at yale.edu>

Citation (from within R, enter citation("dcGSA")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("dcGSA")

Documentation

PDF   Reference Manual
Text   NEWS

Details

biocViews GeneExpression, GeneSetEnrichment, Microarray, RNASeq, Sequencing, Software, StatisticalMethod
Version 1.6.0
In Bioconductor since BioC 3.3 (R-3.3) (1.5 years)
License GPL-2
Depends R (>= 3.3), Matrix
Imports BiocParallel
LinkingTo
Suggests knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package dcGSA_1.6.0.tar.gz
Windows Binary dcGSA_1.6.0.zip
Mac OS X 10.11 (El Capitan) dcGSA_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/dcGSA
Package Short Url http://bioconductor.org/packages/dcGSA/
Package Downloads Report Download Stats

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