To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("crisprseekplus")

In most cases, you don't need to download the package archive at all.

crisprseekplus

DOI: 10.18129/B9.bioc.crisprseekplus    

crisprseekplus

Bioconductor version: Release (3.5)

Bioinformatics platform containing interface to work with offTargetAnalysis and compare2Sequences in the CRISPRseek package, and GUIDEseqAnalysis.

Author: Sophie Wigmore <Sophie.Wigmore at umassmed.edu>, Alper Kucukural <alper.kucukural at umassmed.edu>, Lihua Julie Zhu <julie.zhu at umassmed.edu>, Michael Brodsky <Michael.Brodsky at umassmed.edu>, Manuel Garber <Manuel.Garber at umassmed.edu>

Maintainer: Alper Kucukural <alper.kucukural at umassmed.edu>

Citation (from within R, enter citation("crisprseekplus")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("crisprseekplus")

Documentation

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PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews GeneRegulation, SequenceMatching, Software
Version 1.2.0
In Bioconductor since BioC 3.4 (R-3.3) (1 year)
License GPL-3 + file LICENSE
Depends R (>= 3.3.0), shiny, shinyjs, CRISPRseek
Imports DT, utils, GUIDEseq, GenomicRanges, GenomicFeatures, BiocInstaller, BSgenome, AnnotationDbi, hash
LinkingTo
Suggests testthat, rmarkdown, knitr, R.rsp
SystemRequirements
Enhances
URL https://github.com/UMMS-Biocore/crisprseekplus
BugReports https://github.com/UMMS-Biocore/crisprseekplus/issues/new
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source crisprseekplus_1.2.0.tar.gz
Windows Binary crisprseekplus_1.2.0.zip
Mac OS X 10.11 (El Capitan) crisprseekplus_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/crisprseekplus
Package Short Url http://bioconductor.org/packages/crisprseekplus/
Package Downloads Report Download Stats

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