DOI: 10.18129/B9.bioc.consensusSeekeR    

Detection of consensus regions inside a group of experiences using genomic positions and genomic ranges

Bioconductor version: Release (3.6)

This package compares genomic positions and genomic ranges from multiple experiments to extract common regions. The size of the analyzed region is adjustable as well as the number of experiences in which a feature must be present in a potential region to tag this region as a consensus region.

Author: Astrid Deschenes [cre, aut], Fabien Claude Lamaze [ctb], Pascal Belleau [aut], Arnaud Droit [aut]

Maintainer: Astrid Deschenes <adeschen at>

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biocViews BiologicalQuestion, ChIPSeq, Coverage, Genetics, MultipleComparison, PeakDetection, Sequencing, Software, Transcription
Version 1.6.0
In Bioconductor since BioC 3.3 (R-3.3) (2 years)
License Artistic-2.0
Depends R (>= 2.10), BiocGenerics, IRanges, GenomicRanges, BiocParallel
Imports GenomeInfoDb, rtracklayer, stringr, S4Vectors, methods
Suggests BiocStyle, ggplot2, knitr, rmarkdown, RUnit
Depends On Me
Imports Me RJMCMCNucleosomes
Suggests Me
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Source Package consensusSeekeR_1.6.0.tar.gz
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