To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("consensusSeekeR")

In most cases, you don't need to download the package archive at all.

consensusSeekeR

 

Detection of consensus regions inside a group of experiences using genomic positions and genomic ranges

Bioconductor version: Release (3.5)

This package compares genomic positions and genomic ranges from multiple experiments to extract common regions. The size of the analyzed region is adjustable as well as the number of experiences in which a feature must be present in a potential region to tag this region as a consensus region.

Author: Astrid Deschenes [cre, aut], Fabien Claude Lamaze [ctb], Pascal Belleau [aut], Arnaud Droit [aut]

Maintainer: Astrid Deschenes <adeschen at hotmail.com>

Citation (from within R, enter citation("consensusSeekeR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("consensusSeekeR")

Documentation

HTML R Script Detection of consensus regions inside a group of experiences using genomic positions and genomic ranges
PDF   Reference Manual
Text   NEWS

Details

biocViews BiologicalQuestion, ChIPSeq, Coverage, Genetics, MultipleComparison, PeakDetection, Sequencing, Software, Transcription
Version 1.4.0
In Bioconductor since BioC 3.3 (R-3.3) (1.5 years)
License Artistic-2.0
Depends R (>= 2.10), BiocGenerics, IRanges, GenomicRanges, BiocParallel
Imports GenomeInfoDb, rtracklayer, stringr, S4Vectors, methods
LinkingTo
Suggests BiocStyle, ggplot2, knitr, rmarkdown, RUnit
SystemRequirements
Enhances
URL https://github.com/ArnaudDroitLab/consensusSeekeR
BugReports https://github.com/ArnaudDroitLab/consensusSeekeR/issues
Depends On Me
Imports Me RJMCMCNucleosomes
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source consensusSeekeR_1.4.0.tar.gz
Windows Binary consensusSeekeR_1.4.0.zip
Mac OS X 10.11 (El Capitan) consensusSeekeR_1.4.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/consensusSeekeR/tree/release-3.5
Package Short Url http://bioconductor.org/packages/consensusSeekeR/
Package Downloads Report Download Stats

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