To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("clusterProfiler")

In most cases, you don't need to download the package archive at all.

clusterProfiler

 

statistical analysis and visualization of functional profiles for genes and gene clusters

Bioconductor version: Release (3.5)

This package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.

Author: Guangchuang Yu [aut, cre], Li-Gen Wang [ctb], Giovanni Dall'Olio [ctb] (formula interface of compareCluster)

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("clusterProfiler")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("clusterProfiler")

Documentation

HTML R Script Statistical analysis and visualization of functional profiles for genes and gene clusters
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, Clustering, GO, GeneSetEnrichment, KEGG, MultipleComparison, Pathways, Reactome, Software, Visualization
Version 3.4.4
In Bioconductor since BioC 2.8 (R-2.13) (6.5 years)
License Artistic-2.0
Depends R (>= 3.3.1), DOSE(>= 3.1.3)
Imports AnnotationDbi, ggplot2, GO.db, GOSemSim(>= 2.0.0), magrittr, methods, plyr, qvalue, rvcheck, stats, stats4, tidyr, utils
LinkingTo
Suggests AnnotationHub, GSEABase, KEGG.db, knitr, org.Hs.eg.db, prettydoc, pathview, ReactomePA, testthat, topGO
SystemRequirements
Enhances
URL https://guangchuangyu.github.io/clusterProfiler
BugReports https://github.com/GuangchuangYu/clusterProfiler/issues
Depends On Me
Imports Me bioCancer, debrowser, eegc, LINC, MoonlightR, TCGAbiolinksGUI
Suggests Me ChIPseeker, DOSE, GOSemSim, isomiRs, ReactomePA, TCGAbiolinks
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source clusterProfiler_3.4.4.tar.gz
Windows Binary clusterProfiler_3.4.4.zip
Mac OS X 10.11 (El Capitan) clusterProfiler_3.4.4.tgz
Source Repository git clone https://git.bioconductor.org/packages/clusterProfiler
Package Short Url http://bioconductor.org/packages/clusterProfiler/
Package Downloads Report Download Stats

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