To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("chromPlot")

In most cases, you don't need to download the package archive at all.

chromPlot

 

Global visualization tool of genomic data

Bioconductor version: Release (3.5)

Package designed to visualize genomic data along the chromosomes, where the vertical chromosomes are sorted by number, with sex chromosomes at the end.

Author: Ricardo A. Verdugo and Karen Y. Orostica

Maintainer: Karen Y. Orostica <korostica09 at gmail.com>

Citation (from within R, enter citation("chromPlot")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("chromPlot")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chromPlot")

 

PDF R Script General Manual
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, DataRepresentation, FunctionalGenomics, Genetics, Sequencing, Software, Visualization
Version 1.4.0
In Bioconductor since BioC 3.3 (R-3.3) (1 year)
License GPL (>= 2)
Depends stats, utils, graphics, grDevices, datasets, base, biomaRt, GenomicRanges, R (>= 3.1.0)
Imports
LinkingTo
Suggests qtl, GenomicFeatures, TxDb.Hsapiens.UCSC.hg19.knownGene
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source chromPlot_1.4.0.tar.gz
Windows Binary chromPlot_1.4.0.zip
Mac OS X 10.11 (El Capitan) chromPlot_1.4.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/chromPlot/tree/release-3.5
Package Short Url http://bioconductor.org/packages/chromPlot/
Package Downloads Report Download Stats

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