cancerclass

DOI: 10.18129/B9.bioc.cancerclass    

Development and validation of diagnostic tests from high-dimensional molecular data

Bioconductor version: Release (3.8)

The classification protocol starts with a feature selection step and continues with nearest-centroid classification. The accurarcy of the predictor can be evaluated using training and test set validation, leave-one-out cross-validation or in a multiple random validation protocol. Methods for calculation and visualization of continuous prediction scores allow to balance sensitivity and specificity and define a cutoff value according to clinical requirements.

Author: Jan Budczies, Daniel Kosztyla

Maintainer: Daniel Kosztyla <danielkossi at hotmail.com>

Citation (from within R, enter citation("cancerclass")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("cancerclass", version = "3.8")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cancerclass")

 

PDF R Script Cancerclass: An R package for development and validation of diagnostic tests from high-dimensional molecular data
PDF   Reference Manual

Details

biocViews Cancer, Classification, Microarray, Software, Visualization
Version 1.26.0
In Bioconductor since BioC 2.11 (R-2.15) (6 years)
License GPL 3
Depends R (>= 2.14.0), Biobase, binom, methods, stats
Imports
LinkingTo
Suggests cancerdata
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cancerclass_1.26.0.tar.gz
Windows Binary cancerclass_1.26.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) cancerclass_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/cancerclass
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cancerclass
Package Short Url http://bioconductor.org/packages/cancerclass/
Package Downloads Report Download Stats

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