bioCancer

DOI: 10.18129/B9.bioc.bioCancer    

Interactive Multi-Omics Cancers Data Visualization and Analysis

Bioconductor version: Release (3.7)

bioCancer is a Shiny App to visualize and analyse interactively Multi-Assays of Cancer Genomic Data.

Author: Karim Mezhoud [aut, cre]

Maintainer: Karim Mezhoud <kmezhoud at gmail.com>

Citation (from within R, enter citation("bioCancer")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("bioCancer")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bioCancer")

 

HTML R Script bioCancer: Interactive Multi-OMICS Cancers Data Visualization and Analysis
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews DataRepresentation, GUI, GeneExpression, GeneTarget, MultipleComparison, Network, Pathways, Reactome, Software, Visualization
Version 1.8.0
In Bioconductor since BioC 3.4 (R-3.3) (2 years)
License AGPL-3 | file LICENSE
Depends R (>= 3.3.0), radiant.data (>= 0.8.1), cgdsr (>= 1.2.6), XML (>= 3.98)
Imports DT (>= 0.2), dplyr (>= 0.7.2), shiny (>= 1.0.5), AlgDesign (>= 1.1.7.3), import (>= 1.1.0), methods, shinythemes, Biobase, geNetClassifier, AnnotationFuncs, org.Hs.eg.db, DOSE, clusterProfiler, reactome.db, ReactomePA, DiagrammeR (>= 0.7), visNetwork, htmlwidgets, plyr, tibble
LinkingTo
Suggests BiocStyle, rmarkdown, knitr, testthat (>= 0.10.0)
SystemRequirements
Enhances
URL http://kmezhoud.github.io/bioCancer
BugReports https://github.com/kmezhoud/bioCancer/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package bioCancer_1.8.0.tar.gz
Windows Binary bioCancer_1.8.0.zip
Mac OS X 10.11 (El Capitan) bioCancer_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/bioCancer
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/bioCancer
Package Short Url http://bioconductor.org/packages/bioCancer/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: