beachmat

DOI: 10.18129/B9.bioc.beachmat    

Compiling Bioconductor to Handle Each Matrix Type

Bioconductor version: Release (3.8)

Provides a consistent C++ class interface for a variety of commonly used matrix types, including sparse and HDF5-backed matrices.

Author: Aaron Lun [aut, cre], Hervé Pagès [aut], Mike Smith [aut]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("beachmat")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("beachmat", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("beachmat")

 

HTML R Script 1. Linking to beachmat from another package
HTML R Script 2. Reading data from R matrices in C++
HTML R Script 3. Writing data into R matrix objects
HTML R Script 4. Supporting arbitrary matrix classes
HTML R Script 5. Using beachmat's helper functions
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, DataRepresentation, Infrastructure, Software
Version 1.4.0
License GPL-3
Depends R (>= 3.5)
Imports utils, methods, Rhdf5lib(>= 1.1.4), rhdf5, HDF5Array(>= 1.9.5), DelayedArray(>= 0.7.38), Rcpp (>= 0.12.14), BiocGenerics
LinkingTo Rcpp, Rhdf5lib
Suggests testthat, BiocStyle, knitr, rmarkdown, Matrix, devtools
SystemRequirements C++11
Enhances
URL
Depends On Me
Imports Me
Suggests Me bsseq, DropletUtils, scater, scran
Links To Me bsseq, DropletUtils, scater, scran
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package beachmat_1.4.0.tar.gz
Windows Binary beachmat_1.4.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) beachmat_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/beachmat
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/beachmat
Package Short Url http://bioconductor.org/packages/beachmat/
Package Downloads Report Download Stats

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