arrayQuality

DOI: 10.18129/B9.bioc.arrayQuality    

Assessing array quality on spotted arrays

Bioconductor version: Release (3.8)

Functions for performing print-run and array level quality assessment.

Author: Agnes Paquet and Jean Yee Hwa Yang <yeehwa at stat.berkeley.edu>

Maintainer: Agnes Paquet <paquetagnes at yahoo.com>

Citation (from within R, enter citation("arrayQuality")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("arrayQuality", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews Microarray, QualityControl, Software, TwoChannel, Visualization
Version 1.60.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 13.5 years)
License LGPL
Depends R (>= 2.2.0)
Imports graphics, grDevices, grid, gridBase, hexbin, limma, marray, methods, RColorBrewer, stats, utils
LinkingTo
Suggests mclust, MEEBOdata, HEEBOdata
SystemRequirements
Enhances
URL http://arrays.ucsf.edu/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package arrayQuality_1.60.0.tar.gz
Windows Binary arrayQuality_1.60.0.zip
Mac OS X 10.11 (El Capitan) arrayQuality_1.60.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/arrayQuality
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/arrayQuality
Package Short Url http://bioconductor.org/packages/arrayQuality/
Package Downloads Report Download Stats

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