affypdnn

DOI: 10.18129/B9.bioc.affypdnn    

Probe Dependent Nearest Neighbours (PDNN) for the affy package

Bioconductor version: Release (3.7)

The package contains functions to perform the PDNN method described by Li Zhang et al.

Author: H. Bjorn Nielsen and Laurent Gautier (Many thanks to Li Zhang early communications about the existence of the PDNN program and related publications).

Maintainer: Laurent Gautier<lgautier at gmail.com>

Citation (from within R, enter citation("affypdnn")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("affypdnn")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affypdnn")

 

PDF R Script affypdnn
PDF   Reference Manual

Details

biocViews Microarray, OneChannel, Preprocessing, Software
Version 1.54.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 13.5 years)
License LGPL
Depends R (>= 2.13.0), affy(>= 1.5)
Imports
LinkingTo
Suggests affydata, hgu95av2probe
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package affypdnn_1.54.0.tar.gz
Windows Binary affypdnn_1.54.0.zip
Mac OS X 10.11 (El Capitan) affypdnn_1.54.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/affypdnn
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/affypdnn
Package Short Url http://bioconductor.org/packages/affypdnn/
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