adaptest

DOI: 10.18129/B9.bioc.adaptest    

Data-Adaptive Statistics for High-Dimensional Multiple Testing

Bioconductor version: Release (3.7)

Data-adaptive test statistics represent a general methodology for performing multiple hypothesis testing on effects sizes while maintaining honest statistical inference when operating in high-dimensional settings (). The utilities provided here extend the use of this general methodology to many common data analytic challenges that arise in modern computational and genomic biology.

Author: Weixin Cai [aut, cre, cph], Nima Hejazi [aut], Alan Hubbard [ctb, ths]

Maintainer: Weixin Cai <wcai at berkeley.edu>

Citation (from within R, enter citation("adaptest")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("adaptest")

Documentation

HTML R Script Data-Mining Biomarkers and High-Dimensional Testing
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, DimensionReduction, GeneExpression, Genetics, Microarray, MultipleComparison, Regression, Sequencing, Software
Version 1.0.0
License GPL-2
Depends R (>= 3.5.0)
Imports origami (>= 1.0.0), tmle, calibrate, methods, graphics, stats, utils, SummarizedExperiment
LinkingTo
Suggests testthat, Matrix, SuperLearner, earth, gam, nnls, airway, rmarkdown, knitr, BiocStyle
SystemRequirements
Enhances
URL https://github.com/wilsoncai1992/adaptest
BugReports https://github.com/wilsoncai1992/adaptest/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package adaptest_1.0.0.tar.gz
Windows Binary adaptest_1.0.0.zip
Mac OS X 10.11 (El Capitan) adaptest_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/adaptest
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/adaptest
Package Short Url http://bioconductor.org/packages/adaptest/
Package Downloads Report Download Stats

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